The 2009–10 Florida Atlantic Owls men's basketball team represented Florida Atlantic University in the 2009–10 NCAA Division I men's basketball season. The Owls, led by head coach Mike Jarvis, played their home games at FAU Arena in Boca Raton, Florida, as members of the Sun Belt Conference.
On December 19, 2009, Florida Atlantic lost in the Orange Bowl Basketball Classic to Miami 87-69.
The Owls finished the 2009–10 season with a 14–16 record. They lost in the first round of the Sun Belt tournament to South Alabama 52–51 in March 2010.
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