The 2006 Florida A&M Rattlers football team represented Florida A&M University as a member of the Mid-Eastern Athletic Conference (MEAC) during the 2006 NCAA Division I FCS football season. Led by second-year head coach Rubin Carter, the Rattlers compiled an overall record of 7–4, with a mark of 5–3 in conference play, and finished fourth in the MEAC.

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