St. Hovhannes Church may refer to several former Armenian churches in the Nakhchivan Autonomous Republic of Azerbaijan:
St. Hovhannes Church (Chalkhangala), in Kangarli district St. Hovhannes Church (Dyrnys), in Berdak, Ordubad district St. Hovhannes Church (Jahri), in Babek district St. Hovhannes Church (Tumbul), in Nakhchivan city St. Hovhannes-Mkrtich Church (Yukhari Aylis), in Ordubad district
See also Surp Hovhannes Church, Byurakan, a 10th-century basilica in Aragatsotn Province, Armenia Surp Hovhannes Church of Voskevaz, a basilica in Aragatsotn Province, Armenia St. John's Church (disambiguation)