Solute carrier family 66 member 3 is a gene in humans that encodes the protein SLC66A3. The function of the SLC66A3 protein is not yet well understood but belongs to a family of five evolutionarily related proteins, the SLC66 lysosomal amino acid transporters. SLC66A3 is localized to the endoplasmic reticulum and has four transmembrane domains.
Gene The SLC66A3 is a gene consisting of 26,831 base pairs spanning from 11,155,467 to 11,178,856 on chromosome 2. SLC66A3 mapped to the plus strand at 2p25.1 and contains 7 exons. The SLC66A3 gene is neighbored by the genes ROCK2, C2orf50, and KCNF1. ROCK2 and C2orf50 are both located upstream of SLC66A3 whereas KCNF1 is located upstream.
Transcripts SLC66A3 has 14 different mRNAs, there are 12 alternatively-spliced mRNAs that produce functional proteins and 2 unspliced variations that do not. The longest transcript is transcript variant 1 which produces the longest protein at 202 amino acids in length.
Protein The SLC66A3 protein coding gene that produces a protein with the same name. The mRNA transcript variant 1 is 1,717 bp with 7 exons and produces the longest protein, transcript variant 1. SLC66A3 is a 202 amino acid, 22.6 kDa protein with a theoretical isoelectric point of 9.14.
Secondary structure The secondary structure of SLC66A3 is predicted to consist of 7 α-helices. The protein contains a signal peptide, 4 transmembrane regions, and a splicing variant region, and is localized in the endoplasmic reticulum.
Tertiary structure I-TASSER predicts that the tertiary structure contains 7 coils with high certainty. DiANNA predicts disulfide bonds between positions 9 - 57, 17 - 121, and 82 - 157.
Gene level regulation
Promoter The promoter of SLC66A3 is 1,169 base pairs long and is located 1000 base pairs upstream of the 5' UTR.
Transcription factors Many different transcription factors regulate the expression of the SLC66A3 gene. Some of these include RNA polymerase II transcription factor II B, Myc associated zinc fingers, EGR/nerve growth factor induced protein C & related factors, and EVI1-myeloid transforming protein. +Transcription factorFunctionRNA polymerase II transcription factor II BStimulation of transcription initiation.EVI1-myleoid transforming proteinInvolved in the proliferation and differentiation of hematopoietic cells through interaction with GATA-2.Krueppel like transcription factorsInvolved in β-globin expression and the development of erythrocytes.GATA binding factorsInvolved in the regulation of transcription during developmental stages and maintaining and developing hematopoietic systems.
Expression patterns SLC66A3 is expressed at high levels in a variety of tissues throughout the body but is most highly abundant in the whole blood and white blood cells. SLC66A3 is expressed at high levels, approximately 2.1 times more than the average gene.
Protein Level Regulation
Post translational modifications SLC66A3 is predicted to undergo phosphorylation, N-glycosylation, and myristoylation.
Homology/Evolution
Orthologs SLC66A3 was present in the common ancestor of animals and is found in all animals but not fungi. Genus, SpeciesCommon NameTaxonomic GroupDivergence date from humans (MYA)accession numberSequence Length(AA)Sequence Identity(%)Homo sapiensHumanPrimates0NP_689604.1202100Mus musculusMouseRodentia89NP_766162.220285Phascolarctos cinereusKoalaMarsupialia160XP_020841056.120374Anolis carolinensisGreen anoleSquamata318XP_003215467.120264Gallus gallusChickenGalliformes318XP_040524789.120171Danio rerioZebrafishCypriniformes433NP_001004615.120359Electrophorus electricusElectric eelGymnotiformes433XP_026863988.220358Callorhinchus miliiElephant sharkChimaera465XP_007895274.121859Petromyzon marinusSea lampreyPetromyzontiformes599XP_032825995.120152Crassostrea gigasPacific oysterOstreida736XP_034312411.120836Drosophila willistoniFruitflyDiptera736XP_002074377.222034Owenia fusiformisTube wormCanalipalpata736CAC9661908.123329Lytechinus variegatusVariegated sea urchinTemnopleuroida627XP_041484893.122429Asterias rubensCommon starfishForcipulatida627XP_033644897.121328Amphimedon queenslandicaSpongeHaplosclerida777XP_019856231.122126
References