Agynaikothrips is a genus of thrips in the family Phlaeothripidae.Roskov Y., Ower G., Orrell T., Nicolson D., Bailly N., Kirk P.M., Bourgoin T., DeWalt R.E., Decock W., Nieukerken E. van, Zarucchi J., Penev L., eds. (2019). Species 2000 & ITIS Catalogue of Life, 2019 Annual Checklist. Species 2000: Naturalis, Leiden, the Netherlands. ISSN 2405-884X. It occurs in Asia, with one species known from Japan and the other from Taiwan.

Species Agynaikothrips okinawaensis Agynaikothrips venapennis

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