The Vice-Chancellor of Federal University of Agriculture, Abeokuta is the executive head of the University. Upon the VC's appointment by her governing council, the VC has the overall responsibility for the policy and administration of the University. Professor Olusola Kehinde served as the Acting Vice-Chancellor of Federal University of Agriculture, Abeokuta from 1 November, 2022 to 31 March, 2023. Subsequently, he was appointed as the 7th substantive Vice-Chancellor, officially assuming office on 1 April, 2023.
Past Vice-Chancellors Nurudeen Olorunimbe Adedipe (1988–1995) Julius Amioba Okojie (1996–2001) Israel Folorunso Adu (2001–2006) Ishola Adamson (2006–2007) Oluwafemi Olaiya Balogun (2007–2012) Olusola Bamidele Oyewole (2012–2017) Ololade Ade Enikuomehin (May 2017 – October 2017) Felix Kolawole Salako (2017–2022) Olusola Kehinde (acting) (2022–present)
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