Clapper Hollow Creek is a river in Schoharie County, New York. It flows into Charlotte Creek southwest of Charlotteville. Part of the creek flows through the Clapper Hollow State Forest, which was purchased by the state in the 1930s.

Fishing Clapper Hollow Creek is a classified trout stream. The brook can be accessed via a parking area approximately west of State Route 10 on Cottage Road.

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