Many chronic diseases and cancers are associated with infectious microbes. By this it is meant that the associated microbe is found in the tissues of patients with the disease more frequently than in the bodies of healthy people. When a microbe such as a virus, bacterium, fungus, protozoan or archaeon has been linked to a disease, researchers may start to investigate whether that microbe might be the underlying cause of the disease, or might play a causal role in the illness in conjunction with other causal factors.

Other causal factors in chronic diseases and cancers Other potential causal factors that may play a role in precipitating chronic diseases and cancers are: environmental toxins, radiations, genetics, epigenetics, events during pregnancy, stress, diet, and lifestyle factors. Chronic diseases and cancers are generally assumed to be multifactorial, meaning that the disease is only precipitated when multiple factors are present. For example: in a murine model of Crohn's disease, this illness can be precipitated by a norovirus, but only when a specific gene variant is present, along with a certain toxin which damages the gut.

Economic costs of chronic diseases In the USA, 90% of the $4.9 trillion annual healthcare budget goes on chronic diseases and mental illnesses.

List of chronic diseases and cancers associated with infectious microbes

The list below includes some of the more common chronic diseases and cancers that have been associated with infectious microbes. Disease Microbes Linked to the Disease Alzheimer's disease Alzheimer's disease is associated with the bacteria Porphyromonas gingivalis, Chlamydia pneumoniae, Helicobacter pylori and Fusobacterium nucleatum. Alzheimer's is associated with the protozoan parasite Toxoplasma gondii. Alzheimer's is associated with herpes simplex virus 1 in individuals who possess the APOE-4 form of the APOE gene (APOE-4 enables the virus to enter the brain). Alzheimer's has been linked to cytomegalovirus infection of the brain, which may enter the brain by travelling along the vagus nerve.

The viruses HHV-6A and HHV-7 have been found more frequently in the brains of Alzheimer's patients than those of healthy controls. Fungal infections have been found in the brains of Alzheimer patients. Amyotrophic lateral sclerosis Amyotrophic lateral sclerosis, the most common of five forms of motor neuron disease, is associated with echovirus, an enterovirus infection of the central nervous system, and with retrovirus activity (it is not known whether this retrovirus activity arises from a human endogenous retrovirus, or from an exogenous retrovirus). Anorexia nervosa Infection with borrelia species bacteria is associated with anorexia nervosa. In rare cases, anorexia nervosa may arise after infection with Streptococcus species bacteria. Adolescent girls who had hospital-treated infections, or had less severe infections treated with anti-infective agents, were found to be at increased risk of developing anorexia nervosa, bulimia nervosa and other eating disorders. Anorexia (the symptom of appetite loss, which is distinct from anorexia nervosa) is associated with the protozoan parasite dientamoeba fragilis. Anxiety disorder Anxiety is associated with cytomegalovirus, and the bacterium Helicobacter pylori. Anxiety is associated with Toxoplasma gondii, and associated with higher levels of IgG antibodies to this parasite. Anxiety as a personality trait is associated with higher antibody titers to Epstein-Barr virus. Individuals with more attachment anxiety had higher EBV VCA IgG antibody titers. Asthma Asthma is associated with rhinovirus, human respiratory syncytial virus, and the bacterium Chlamydia pneumoniae. Chlamydia pneumoniae is particularly associated with adult-onset asthma. Atherosclerosis Atherosclerosis is associated with cytomegalovirus. Atherosclerosis is linked to the bacteria Helicobacter pylori and Chlamydia pneumoniae. Attention deficit hyperactivity disorder Attention deficit hyperactivity disorder (ADHD) and learning disabilities are associated with the bacteria Borrelia burgdorferi and Streptococcus, and with the viruses HIV and enterovirus 71. Viral infections during pregnancy, at birth and in early childhood are risk factors for ADHD. Autism Autism is linked to congenital infection with rubella virus or cytomegalovirus. Clostridia bacterial species are associated with autism (these bacteria are present in greater numbers in the guts of autistic children). Autoimmune diseases Autoimmune diseases are strongly associated with enteroviruses such as Coxsackie B virus. Autoimmune diseases are also associated with Epstein-Barr virus, cytomegalovirus, parvovirus B19, and HIV. Autoimmune diseases are linked to the bacterium Mycobacterium tuberculosis. Autoimmune thyroid disease is associated with Epstein-Barr virus, and Helicobacter pylori. Bipolar disorder Bipolar disorder is associated with Borna disease virus, and with Borrelia species bacteria. Bipolar has been linked to Toxoplasma gondii and cytomegalovirus. The level of cognitive impairment in bipolar disorder is associated with herpes simplex virus 1. CancerSome estimates currently attribute 15% to 20% of all cancers to microbial causes. In future, this percentage may be revised upwards if the microbes currently associated with cancers (such as those listed below) are proven to actually cause those cancers. (For the sake of completeness, some microbes proven to cause cancers are included in the list, in addition to microbes that have been linked to cancers, but are not yet proven to cause the cancer.)

Adrenal tumor is associated with BK virus and simian virus 40. Anal cancer is associated with human papillomaviruses (HPV). Bladder cancer can be caused by Schistosoma helminths, and BK virus. Brain tumor. Glioblastoma multiforme is associated with cytomegalovirus, BK virus, JC virus, and simian virus 40. Breast cancer is associated with bovine leukemia virus, mouse mammary tumor virus, Epstein-Barr virus, and human papillomaviruses (HPV). Carcinoid tumors are associated with enterovirus infections. Cervical cancer can be caused by HPV. Colorectal cancer is associated with the bacteria Helicobacter pylori, Streptococcus bovis and Fusobacterium nucleatum, with HPV, and with the helminth Schistosoma japonicum. JC virus may be a risk factor for colorectal cancer. Gallbladder cancer is associated with the bacterium Salmonella typhi. Hodgkin's lymphoma is associated with Epstein-Barr virus, hepatitis C virus, and HIV. Kaposi's Sarcoma can be caused by Kaposi's sarcoma herpesvirus and HIV. Liver cancer. Hepatocellular carcinoma can be caused by hepatitis B virus, hepatitis C virus, and by the helminth Schistosoma japonicum. Lung cancer is associated with the bacterium Chlamydia pneumoniae, with HPV, and with Merkel cell polyomavirus. Leukemia. Adult T-cell leukemia can be caused by human T-cell leukemia virus-1. Mesothelioma is associated with simian virus 40, especially in conjunction with asbestos exposure. Multiple myeloma is associated with hepatitis B virus and hepatitis C virus. Nasopharyngeal carcinoma can be caused by Epstein-Barr virus. Non-Hodgkin lymphoma is associated with HIV and simian virus 40. Oropharyngeal cancer can be caused by HPV. Ovarian cancer is associated with mumps virus. Pancreatic cancer is associated with hepatitis B virus, and the bacterium Helicobacter pylori. Prostate cancer is associated with BK virus, and HPV. Skin neoplasm (skin tumor or cancer) is associated with HPV. Squamous cell carcinoma is associated with HPV. Stomach cancer is associated with the bacterium Helicobacter pylori. Thyroid cancer is associated with simian virus 40.Chronic fatigue syndromeMyalgic encephalomyelitis / chronic fatigue syndrome (ME/CFS) is primarily associated with two enteroviruses, namely Coxsackie B virus and echovirus; with three herpesviruses, namely Epstein-Barr virus, cytomegalovirus and human herpesvirus 6; and with SARS-CoV-2. More rarely, ME/CFS may involve chronic infections with the following viruses, bacteria and protozoa: varicella zoster virus, parvovirus B19, Chlamydia pneumoniae, HHV-7, Coxiella burnetii, Giardia lamblia, Ross River virus and West Nile virus. Chronic myocarditisChronic myocarditis is associated with the enterovirus Coxsackie B virus.Chronic obstructive pulmonary diseaseChronic obstructive pulmonary disease (COPD), which includes both chronic bronchitis and emphysema, is associated with Chlamydia pneumoniae and Epstein-Barr virus.Crohn's diseaseCrohn's disease is linked to a thin layer of infection on the intestinal lining with the fungus Candida tropicalis, in tandem with the bacteria Escherichia coli and Serratia marcescens. Crohn's disease development has been linked to commensal yeast Candida albicans.One study found ileocecal Crohn's disease is associated with viral species from the enterovirus genus (but note that all the study cohort with ileocecal Crohn's disease had disease-associated mutations in either their NOD2 or ATG16L1 genes). Crohn's disease is associated with Mycobacterium avium subspecies paratuberculosis.In a mouse model, Crohn's disease is precipitated by the norovirus CR6 strain, but only in combination with a variant of the Crohn's susceptibility gene ATG16L1, and chemical toxic damage to the gut. In other words, in this mouse model, Crohn's is precipitated only when all three causal factors (virus, gene, and toxin) act in combination.Coronary heart diseaseCoronary heart disease is associated with herpes simplex virus 1 and the bacterium Chlamydia pneumoniae. Coronary heart disease is linked to cytomegalovirus.DementiaDementia is associated with herpes simplex virus type 1, herpes simplex virus type 2, cytomegalovirus, West Nile virus, Borna disease virus, and HIV. Dementia is also associated with the helminth Taenia solium (pork tapeworm), and with Borrelia species bacteria.DepressionDepression is associated with cytomegalovirus, Borna disease virus, West Nile virus, the parasite Toxoplasma gondii, and the bacterial species Bartonella and Borrelia. Depression in children and adolescents is linked to prior acute enterovirus infection of the central nervous system. It is thought that depression may be precipitated by the effect of immune signals (such as pro-inflammatory cytokines) reaching the brain from infections located in the peripheries of the body.

Seasonal affective disorder (winter depression) is associated with Epstein-Barr virus.Diabetes mellitus type 1Type 1 diabetes is associated with viral species from the enterovirus genus, such as echovirus 4, echovirus 16, and coxsackie B4 virus. Coxsackie B virus can infect and destroy the insulin-producing beta cells in the pancreas, and also damage these cells via indirect autoimmune mechanisms. Coxsackie B1 virus is associated with a higher risk of the beta cell autoimmunity that portends type 1 diabetes, whereas Coxsackie B3 and B6 viruses is associated with a reduced risk of such autoimmunity (possibly due to immune cross-protection against Coxsackie B1 virus).