List of protein secondary structure prediction programs

List of notable protein secondary structure prediction programs

Name Method description Type Link Initial releaseRaptorX-SS8 predict both 3-state and 8-state secondary structure using conditional neural fields from PSI-BLAST profiles Webserver/downloadable server download 2011 GOR Information theory/Bayesian inference Many implementations Basic GOR 2002 (GOR V) Jpred Multiple Neural network assignment from PSI-BLAST and HMMER profiles. Predicts secondary structure and solvent accessibility Webserver server and API 1998 PredictProtein Profile-based neural network Webserver server 1992 PSIPRED two feed-forward neural networks which perform an analysis on output obtained from PSI-BLAST Webserver server 1999

See also List of protein structure prediction software Protein structure prediction