This is a list of Khans of the Yarkent Khanate (1514–1705) and the Turpan Khanate (1487–1660?).
Said Khan successors in the Yarkent Khanate (1465–1759)
Abdurashid Khan (in Aksu 1521–1533) 1533–1560, son of Sultan Said Khan. Died in 1560 in the age of 52. Abdul Karim Khan (Yarkand) (1560–1591), second son of Abdurashid Khan. Died in 1591 in the age of 63. Muhammad Khan (in Turfan 1588–1591) 1591–1609, 5th son of Abdurashid Khan, in 1603 was visited in Yarkand by Portuguese Jesuit Bento de Góis, who was searching land ways from India to Ming China, headed trade mission on behalf of Moghul Emperor of India Akbar the Great and had a Letter of Safe Conduct, granted by Akbar and addressed to Muhammad Khan, with him. Died in 1609 in the age of 72. Shudja ad-Din Ahmad Khan (1609–1618), son of Muhammad Khan, grandson of Abdurashid Khan, was killed in 1618 during hunting. Kuraysh Sultan (1618), son of Yunus Sultan, grandson of Abdurashid Khan, ruled only 9 days before he was killed. Abd al-Latif (Afak) Khan (1618–1630), second son of Shudja ad-Din Ahmad Khan, who was only 13 when was set up on khanship, died in 1630 in the age of 25. Sultan Ahmad Khan (Pulat Khan) (in Aksu 1617–1630, since age of 4) 1630–1633, first son of Timur Sultan, who was the first son of Shuja ad-Din Ahmad Khan and died in 1615. Mahmud Sultan (Qilich Khan) (1633–1636), second son of Timur Sultan, died in the age of 22 when was poisoned in 1636 by Khoja Yahiya (died in 1646 in the age of 63), son of Khoja Ishak Wali (died in 1599 in the age of 94), founder of Ishakiyya branch of Nakshbandi Khojagan Sufi Order, followers of which were known as Kara Taghliks. Sultan Ahmad Khan (Pulat Khan) (1636–1638), restored on khanship with help of Kara Taghlik leader Khoja Yahiya, who was granted village Guma near Khotan by Sultan Ahmad Khan, resigned in 1638 on demands of Kashgar and Yarkand emirs in favor of Abdullah Khan, died in 1640 in the age of 27. Abdullah Khan (in Turfan 1634/5–1638/9) 1638–1669, the eldest son of Abduraim Khan, grandson of Abdurashid Khan. During his reign Baghistan in Ili River Valley of former Moghulistan (with tomb of Tughluk Timur Khan, founder of Moghul Dynasty in 1347, in Almalik near Ghulja) was lost to Dzungar Khan Erdeni Batur (1634–1653) in 1651, who created Dzungar Khanate in 1634 under Choros nobility, after former Confederation of 4 Kalmyk tribes (Khoit, Khoshut, Choros and Torghut ) collapsed in Dzungaria in 1628. Abdullah Khan was expelled by Kashgar and Yarkand Beks to India in 1669, where he was received by Moghul Emperor Aurangzeb, who arranged his Hajj to Mecca and provided all supplies, died on October 30, 1675, in India in the age of 67, buried in Agra. Nur ad-Din Sultan (in Aksu 1649–1667) 1667–1668 in Kashgar and Yengisar, the youngest son of Abdullah Khan, died in 1668 in the age of 31 due to heavy drinking, reigned one year with help of the Kara Yanchuks , mercenaries from Dzungars and Kyrgyz tribes, who were first recruited on service in Yarkand Khanate during last years of reigning of Abdullah Khan. Ismail Khan (in Chalish 1666–1669, in Aksu 1669–1670) 1669, the 5th son of Abduraim Khan, grandson of Abdurashid Khan, disciple of Kara Taghlik leader Khoja Ubaidullah (Khoja Shadi), son of Khoja Yahiya, was declared a Khan in Aksu after Abdullah Khan fled to India. Yuibars Khan (in Kashgar 1638–1667, since age of 8) 1669–1670, the eldest son of Abdullah Khan, disciple of Ak Taghlik leader Khoja Mohammad Yusuf (son of Khoja Kalon who died in 1598 and was founder of Ishkiya branch of Nakshbandi Khojagan Sufi Order, followers of which were known as Aktaghliks) and his son Appak Khoja, during his reign positions of Ak Taghliks in Yarkand Khanate greatly increased, was killed in 1670 by Dzungar supporter Erka Bek, main controller of Dzungar Khan Sengge (1653–1671) in Yarkand, in the age of 40. Abd al Latif Sultan (1670), son of Yulbars Khan, who was set up on khanship by Ak Taghliks, was killed in the same 1670 by Kara Taghliks with all other sons of Yulbars Khan. Ismail Khan (1670–1678), restored on April 2, 1670, by Kara Taghliks, expelled Appak Khoja and his son Yahia Khoja from the country in 1670, in 1678 was captured by Dzungars in Yarkand (they were invited into the country by Ak Taghlik leader Appak Khoja who used for this recommendation letter from 5th Dalai Lama with whom he met in exile), died in Ili River Valley (Baghistan) in 1680 in the age of 56. Abd ar-Rashid Khan II (1678–1682), the eldest son of Sultan Said Baba Khan, set up on khanship by Dzungar Galdan (1671–1697), who came to Yarkand with Appak Khoja and was rewarded by him with 4,000 pcs of fine clothes and 100,000 silver coins (tangas) for military help. In 1682, Abd ar-Rashid Khan II was sent to Ili under escort by Dzungars, who reacted on complaint of Appak.Khoja to Galdan against Abd ar-Rashid Khan II and again were generously rewarded by him. Abd ar-Rashid Khan II fled to Beijing with his son Sultan and surrendered to the Kangxi Emperor in 1696 after Galdan's collapse. Muhammad Imin Khan (1682–1692; 1680–1682 in Chalish, 1682 in Turfan), second son of Sultan Said Baba Khan. After his oldest brother Abd ar-Rashid Khan II was expelled, Muhammad Imin Khan was recalled from Turpan and elected a Khan on a Kurultai of Kashgar and Yarkand Begs. Organized several expeditions against Dzungars. It caused no objections from Appak Khoja, who even married Muhammad Imin Khan's sister Khanum Padshah to save his already shaken prestige and influence among population. In 1692 Muhammad Imin Khan issued State Order (Yarlik ) about expelling Appak Khoja and his son Yahiya Khoja from Yarkent Khanate. In response, Appak Khoja swore to exterminate all descendants of Chengiz Khan in the country and collected troops of his disciples. In decisive battle near Kargilik in 1692 most Muhammad Imin Khan's troops deserted him and joined Khojas. Muhammad Amin Khan fled to the mountains where he was killed. Appak Khoja, usurper, (1692–1694), died in 1694. In 1692 set up his regime in Yarkand and Kashgar (was declared an absolute ruler in Yarkand royal palace Altunluk with its 9 gates that led to the Hall of Reception, while his son Yahia Khoja was nominally declared a Khan) after the death of Muhammad Amin Khan, expelled Kara Taghlik leader Khoja Daniyal into Kashmir. Yahiya Khoja (in Kashgar 1690–1692) 1692–1695, son of Appak Khoja, set up on khanship by Appak Khoja, killed in 1695 by Hanim Padsha. Hanim Padsha (Khanum Padshah) (1695), sister of Muhammad Imin Khan, widow of Appak Khoja, was killed in 1695. Muhammad Mumin Khan (Akbash Khan) (1695–1705), the youngest son of Sultan Said Baba Khan, great-grandson of Abdurashid Khan, disciple of Kara Taghliks, recalled Kara Taghlik leader Khoja Daniyal (died in 1735) from exile in Kashmir to resist Ak Taghliks and Dzungars, fled to India in 1705 under protection of Aurangzeb of Moghul Empire. The remnants of the state fell to two different rival branches of Khojas- Ak Taghliks and Kara Taghliks. Aqtaghlyq branch of Khojas, a confederation under the influence of the Dzungars, took power in Kashgar where Ahmad Khoja, son of Yahiya Khoja, was declared a Khan. In Yarkand Kara Taghliks took power with Khoja Daniyal being declared a Khan, that caused a civil war between Kashgar and Yarkand.