An estuary is a partially enclosed coastal body of brackish water where freshwater from rivers or streams meets and mixes with saltwater from the open sea. Estuaries form transition zones between riverine and marine environments and are classified as ecotones, areas where different ecosystems overlap. They are influenced by both marine processes (such as tides, waves, and saline water intrusion) and fluvial processes (including freshwater flow and sediment input). The mixing of seawater and freshwater provides high levels of nutrients both in the water column and in sediment, making estuaries among the most productive natural habitats in the world.

Most existing estuaries originated during the Holocene epoch with the flooding of river-eroded or glacially scoured valleys when the sea level began to rise about 10,000–12,000 years ago. Estuaries can be classified using four fundamental criteria. These include salinity distribution, geomorphology, water circulation and vertical stratification, and system energetics. They can have many different names, such as bays, harbors, lagoons, inlets, or sounds, although some of these water bodies do not strictly meet the above definition of an estuary and could be fully saline.

Many estuaries suffer degeneration from a variety of factors including soil erosion, deforestation, overgrazing, overfishing and the filling of wetlands. Eutrophication may lead to excessive nutrients from nitrogen run off, sewage and animal wastes; pollutants including heavy metals, polychlorinated biphenyls, radionuclides and hydrocarbons from sewage inputs, and diking or damming for flood control or water diversion.

Definition

The word "estuary" is derived from the Latin word aestuarium meaning tidal inlet of the sea, which in itself is derived from the term aestus, meaning tide. There have been many definitions proposed to describe an estuary. The most widely accepted definition is: "a semi-enclosed coastal body of water, which has a free connection with the open sea, and within which seawater is measurably diluted with freshwater derived from land drainage". However, this definition excludes a number of coastal water bodies such as coastal lagoons and brackish seas.

A more comprehensive definition of an estuary is "a semi-enclosed body of water connected to the sea as far as the tidal limit or the salt intrusion limit and receiving freshwater runoff; however the freshwater inflow may not be perennial, the connection to the sea may be closed for part of the year and tidal influence may be negligible". This broad definition also includes fjords, lagoons, river mouths, and tidal creeks.

Overall, an estuary is a dynamic ecosystem having a connection to the open sea through which the sea water enters with the rhythm of the tides. The effects of tides on estuaries can show nonlinear effects on the movement of water which can have important impacts on the ecosystem and waterflow. The seawater entering the estuary is diluted by the fresh water flowing from rivers and streams. The pattern of dilution varies between different estuaries and depends on the volume of freshwater, the tidal range, and the extent of evaporation of the water in the estuary.

Estuarine ecosystems Estuaries are dynamic coastal ecosystems shaped by the interaction of riverine and marine processes. The mixing of freshwater inflows with oceanic waters creates constantly changing physical and chemical conditions that influence habitat structure, nutrient availability, and biological productivity.

This transitional environment supports a diverse and highly interconnected community of organisms. Species from freshwater, marine, and terrestrial systems coexist and interact within estuaries, forming complex food webs and nutrient cycles. Together, these interactions make estuaries essential ecosystems that maintain biodiversity, regulate environmental processes, and link land, freshwater, and marine environments into a single integrated system.

Ecosystem services Estuaries provide a wide range of ecosystem services that sustain both ecological productivity and human well-being. They function as nursery habitats, supporting the early life stages of many marine fish and shellfish, while also maintaining mangroves, seagrasses, salt marshes, and seaweeds that recycle nutrients and support productive fisheries. These ecosystems serve as critical migration corridors for anadromous and catadromous fish.

In addition, estuaries offer habitat for migratory birds and endangered species, enhancing biodiversity and supporting ecotourism opportunities. Water draining from upland areas carries sediments, nutrients, and pollutants into estuaries, where wetlands such as swamps and salt marshes naturally filter these materials improving water clarity and quality for both marine organisms and coastal communities. Vegetation, such as salt marsh grasses, also stabilize shorelines and help reduce erosion, providing a natural buffer against storm impacts and sea-level rise, thereby protecting coastal environments and human infrastructure.

Classification based on geomorphology

Drowned river valleys

Drowned river valleys are also known as coastal plain estuaries. In places where the sea level is rising relative to the land, sea water progressively penetrates into river valleys and the topography of the estuary remains similar to that of a river valley. This is the most common type of estuary in temperate climates. Well-studied estuaries include the Severn Estuary in the United Kingdom and the Ems Dollard along the Dutch-German border.

The width-to-depth ratio of these estuaries is typically large, appearing wedge-shaped (in cross-section) in the inner part and broadening and deepening seaward. Water depths rarely exceed . Examples of this type of estuary in the U.S. are the Hudson River, Chesapeake Bay, and Delaware Bay along the Mid-Atlantic coast, and Galveston Bay and Tampa Bay along the Gulf Coast.

Lagoon-type or bar-built

Bar-built estuaries are found in a place where the deposition of sediment has kept pace with rising sea levels so that the estuaries are shallow and separated from the sea by sand spits or barrier islands. They are relatively common in tropical and subtropical locations.

These estuaries are semi-isolated from ocean waters by barrier beaches (barrier islands and barrier spits). Formation of barrier beaches partially encloses the estuary, with only narrow inlets allowing contact with the ocean waters. Bar-built estuaries typically develop on gently sloping plains located along tectonically stable edges of continents and marginal sea coasts. They are extensive along the Atlantic and Gulf coasts of the U.S. in areas with active coastal deposition of sediments and where tidal ranges are less than . The barrier beaches that enclose bar-built estuaries have been developed in several ways: building up of offshore bars by wave action, in which sand from the seafloor is deposited in elongated bars parallel to the shoreline, reworking of sediment discharge from rivers by a wave, current, and wind action into beaches, overwash flats, and dunes, engulfment of mainland beach ridges (ridges developed from the erosion of coastal plain sediments around 5000 years ago) due to sea level rise and resulting in the breaching of the ridges and flooding of the coastal lowlands, forming shallow lagoons, elongation of barrier spits from the erosion of headlands due to the action of longshore currents, with the spits growing in the direction of the littoral drift.

Fjord-type Fjords were formed where Pleistocene glaciers deepened and widened existing river valleys so that they become U-shaped in cross-sections. At their mouths there are typically rocks, bars or sills of glacial deposits, which have the effects of modifying the estuarine circulation.

Fjord-type estuaries are formed in deeply eroded valleys formed by glaciers. These U-shaped estuaries typically have steep sides, rock bottoms, and underwater sills contoured by glacial movement. The estuary is shallowest at its mouth, where terminal glacial moraines or rock bars form sills that restrict water flow. In the upper reaches of the estuary, the depth can exceed . The width-to-depth ratio is generally small. In estuaries with very shallow sills, tidal oscillations only affect the water down to the depth of the sill, and the waters deeper than that may remain stagnant for a very long time, so there is only an occasional exchange of the deep water of the estuary with the ocean. If the sill depth is deep, water circulation is less restricted, and there is a slow but steady exchange of water between the estuary and the ocean. Fjord-type estuaries can be found along the coasts of Alaska, the Puget Sound region of western Washington state, British Columbia, eastern Canada, Greenland, Iceland, New Zealand, Chile, and Norway.

Tectonically produced These estuaries are formed by subsidence or land cut off from the ocean by land movement associated with faulting, volcanoes, and landslides. Inundation from eustatic sea-level rise during the Holocene Epoch has also contributed to the formation of these estuaries. There are only a small number of tectonically produced estuaries; one example is the San Francisco Bay, which was formed by the crustal movements of the San Andreas Fault system causing the inundation of the lower reaches of the Sacramento and San Joaquin rivers.

Classification based on water circulation

Salt wedge

In this type of estuary, river output greatly exceeds marine input and tidal effects have minor importance. Freshwater floats on top of the seawater in a layer that gradually thins as it moves seaward. The denser seawater moves landward along the bottom of the estuary, forming a wedge-shaped layer that is thinner as it approaches land. As a velocity difference develops between the two layers, shear forces generate internal waves at the interface, mixing the seawater upward with the freshwater. Examples of salt wedge estuaries are the Mississippi River and the Mandovi estuary in Goa during the monsoon period.

Partially mixed As tidal forcing increases, river output becomes less than the marine input. Here, current induced turbulence causes mixing of the whole water column such that salinity varies more longitudinally rather than vertically, leading to a moderately stratified condition. Examples include the Chesapeake Bay and Narragansett Bay.

Well-mixed Tidal mixing forces exceed river output, resulting in a well-mixed water column and the disappearance of the vertical salinity gradient. The freshwater-seawater boundary is eliminated due to the intense turbulent mixing and eddy effects. The lower reaches of Delaware Bay and the Raritan River in New Jersey are examples of vertically homogeneous estuaries.

Inverse Inverse estuaries occur in dry climates where evaporation greatly exceeds the inflow of freshwater. A salinity maximum zone is formed, and both riverine and oceanic water flow close to the surface towards this zone. This water is pushed downward and spreads along the bottom in both the seaward and landward direction. Examples of an inverse estuary are Spencer Gulf, South Australia,Gostin, V. & Hall, S.M. (2014): Spencer Gulf: Geological setting and evolution. In: Natural History of Spencer Gulf. Royal Society of South Australia Inc. p. 21. Saloum River and Casamance River, Senegal.

Intermittent Estuary type varies dramatically depending on freshwater input, and is capable of changing from a wholly marine embayment to any of the other estuary types.

Physiochemical variation