The following is a list of ecoregions in Burundi, according to the Worldwide Fund for Nature (WWF).

Terrestrial ecoregions By major habitat type:

Tropical and subtropical moist broadleaf forests

Albertine Rift montane forests

Tropical and subtropical grasslands, savannas, and shrublands

Central Zambezian miombo woodlands Victoria Basin forest-savanna mosaic

Freshwater ecoregions By bioregion:

Eastern and Coastal Malagarasi-Moyowosi

Great Lakes Lake Tanganyika Lake Victoria Basin