Databases for oncogenomic research are biological databases dedicated to cancer data and oncogenomic research. They can be a primary source of cancer data, offer a certain level of analysis (processed data) or even offer online data mining.
List
The table below gives an overview of databases for that serve specifically for oncogenomic research. Note that this is not a comprehensive list and does not contain databases that have a generic focus. You may find databases containing cancer data among the List of biological databases or Microarray databases.
DatabaseInstitute / OrganizationAlteration TypesPrimary Source The database is the publication site for (some of) its cancer raw dataProcessed Data The database contains cancer data at a certain level of analysis (non-raw data)OrganismsCell lines The database also contains cell line dataPublic Data The database contains cancer data that is available for everyoneRestricted Data The database contains cancer data that is only available under some restrictionThe BioExpress® Oncology Suite from Ocimum Bio Solutions contains gene expression data from primary, metastatic, and benign tumor samples, and normal samples, including matched adjacent controls. (BioExpress Oncology Suite) →Ocimum Bio Solutions, United StatesGene Expression Human, Rat and MouseClinicalTrials.gov contains descriptions and some results from clinical trials, many of which are genomically targeted. →National Institutes of Health, United StatesVarious HumanProject Data Sphere from The CEO Life Sciences Consortium allows researchers to share, integrate, and analyze de-identified patient-level, comparator arm, phase III cancer data. →The CEO Life Sciences Consortium, United StatesVarious HumanCatalogue Of Somatic Mutations In Cancer (COSMIC) →Wellcome Trust Sanger Institute, UKMutationHumancBio Cancer Genomics Portal →Memorial Sloan-Kettering Cancer Center, United StatesCopy number, Mutation, Methylation, Gene Expression, miRNA Expression, Protein, PhosphorylationHumanInternational Cancer Genome Consortium →WorldwideMutationHumanIntegrative Oncogenomics Cancer Browser (IntOGen) →Universitat Pompeu Fabra, SpainCopy number, Mutation, Gene ExpressionHumanMouse Retrovirus Tagged Cancer Gene Database →Institute of Molecular and Cell Biology, SingaporeMutationsMouseMouse Tumor Biology Database →Only contains references to biological dataThe Jackson Laboratory, United StatesCopy number, Mutation, Methylation, Gene ExpressionMouseOncoDB.HCC →Academia Sinica, TaiwanCopy number, Gene Expression, QTLHuman, Mouse, RatGenevestigator → contains data from numerous public repositories including GEO and renowned cancer research projects as TCGA.Nebion AG, SwitzerlandGene ExpressionHuman, Mouse, Rat, Monkey, Dog and othersOncoLand from Omicsoft Corporation contains data from large-scale Genomic projects, include TCGA, ICGC and others]Omicsoft Corporation, United StatesCopy number, Mutation, Methylation, Gene Expression, miRNA Expression, Protein, Phosphorylation Human, Rat and MouseOncomine →Compendia Bioscience, Inc., United StatesGene ExpressionHumanOncoreveal →Boğaziçi University, TurkeyGene ExpressionHumanProgenetix →Universität Zürich, SwitzerlandCopy numberHumanThe Cancer Genome Atlas →National Cancer Institute, United StatesCopy number, Mutation, Methylation, Gene Expression, miRNA expressionHumanCancerResource →University Medicine Berlin, GermanyRoche Cancer Genome Database (RCGDB) Roche Diagnostics, Penzberg, GermanyNetwork of Cancer Genes →King's College London, UKMutationHumanMutaGeneNCBI, NIH, USAMutationNoYesHumanNoYesNo
See also Cancer Research List of biological databases Microarray databases Oncogenomics Oncology
Notes
References
External links National Cancer Institute's List of Datasets and Databases