List of microscopy visualization systems

This is a list of software systems that are used for visualizing microscopy data.

For each software system, the table below indicates which type of data can be displayed: EM = Electron microscopy; MG = Molecular graphics; Optical = Optical microscopy.

Name Applications License Supported OS Citation Comments Amira EM MRI MG Optical commercial 4D cube for life applications Avizo EM MG Optical MRI commercial Windows, Linux, Mac 4D cube for industry applications MountainsMap Image Optical commercial Windows includes shaded spots quantification, contour metrology MountainsMap SEM EM Optical commercial Windows includes SEM 3D stereo reconstruction IMOD EM Optical free and open-source tomviz EM Optical free and open-source Windows, Linux, Mac Integrates Python / SciPy OME EM Optical free and open-source

See also Biological data visualization List of molecular graphics systems

References