Fowler Creek is a stream in Boone County in the U.S. state of Missouri. It is a tributary of Cedar Creek,Jefferson City NW, MO, 7.5 Minute Topographic Quadrangle, USGS, 1969 (1986 rev.) which in turn is a tributary of the Missouri River.

The stream headwaters arise just east of the Columbia regional airportMillersburg SW, MO, 7.5 Minute Topographic Quadrangle, USGS, 1969 (1982 rev.) at . It flows generally south passing through a portion of eastern eastern Boone County and enters Cedar Creek at the Callaway County line at .

It is named after the local Fowler family.

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