This list of structural comparison and alignment software is a compilation of software tools and web portals used in pairwise or multiple structural comparison and structural alignment.
Structural comparison and alignment NAME Description Class Type Flexible Link Author YearReseekFast and accurate protein structure alignment, search and visualizationCαPairYesdownload serverEdgar R.C.2024MUSCLE-3DFast and accurate multiple protein structure alignment and visualizationCαMultiYesdownloadEdgar R.C. & Tolstoy I2024 ARTEMIS Topology-independent superposition of RNA/DNA 3D structures and structure-based sequence alignment AllA Pair No server download Bohdan D.R.; Bujnicki J.M.; Baulin E.F. 2024 ARTEM Superposition of two arbitrary RNA/DNA 3D structure fragments & 3D motif identification AllA Pair No server